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| # | Team | P | W | D | L | F | A | GD | PTS |
|---|---|---|---|---|---|---|---|---|---|
| 1 |  Mito Hollyhock | 24 | 14 | 6 | 4 | 37 | 19 | 18 | 48 |
| 2 |  JEF United Chiba | 24 | 12 | 6 | 6 | 35 | 23 | 12 | 42 |
| 3 |  Vegalta Sendai | 24 | 11 | 9 | 4 | 28 | 21 | 7 | 42 |
| 4 |  Omiya Ardija | 24 | 11 | 8 | 5 | 34 | 21 | 13 | 41 |
| 5 |  Tokushima Vortis | 24 | 11 | 8 | 5 | 24 | 13 | 11 | 41 |
| 6 |  V-Varen Nagasaki | 24 | 10 | 9 | 5 | 39 | 35 | 4 | 39 |
| 7 |  Sagan Tosu | 24 | 11 | 6 | 7 | 25 | 22 | 3 | 39 |
| 8 |  Jubilo Iwata | 24 | 11 | 5 | 8 | 37 | 32 | 5 | 38 |
| 9 |  Imabari FC | 24 | 8 | 10 | 6 | 28 | 23 | 5 | 34 |
| 10 |  Hokkaido Consadole Sapporo | 24 | 10 | 4 | 10 | 31 | 39 | -8 | 34 |
| 11 |  Ventforet Kofu | 24 | 8 | 8 | 8 | 24 | 23 | 1 | 32 |
| 12 |  Fujieda MYFC | 24 | 7 | 7 | 10 | 28 | 32 | -4 | 28 |
| 13 |  Iwaki FC | 24 | 6 | 9 | 9 | 30 | 34 | -4 | 27 |
| 14 |  Oita Trinita | 24 | 6 | 9 | 9 | 20 | 24 | -4 | 27 |
| 15 |  Blaublitz Akita | 24 | 8 | 3 | 13 | 32 | 43 | -11 | 27 |
| 16 |  Montedio Yamagata | 24 | 7 | 5 | 12 | 34 | 36 | -2 | 26 |
| 17 |  Roasso Kumamoto | 24 | 6 | 6 | 12 | 28 | 37 | -9 | 24 |
| 18 |  Kataller Toyama | 24 | 5 | 7 | 12 | 19 | 29 | -10 | 22 |
| 19 |  Renofa Yamaguchi | 24 | 3 | 11 | 10 | 21 | 30 | -9 | 20 |
| 20 |  Ehime FC | 24 | 2 | 10 | 12 | 23 | 41 | -18 | 16 |